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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16569992_16572540_F

Intron Information:

Intron Rank:
144022
Intron Class:
major
Intron Phase:
Intron Coordinates:
16569992 - 16572540
Intron Length:
2549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
83.4
28
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.8
0.83
0.7
80.7
30.6
Minor 5ss
37.3
-1.4
2.9
50.4
39.3
Minor BPS
78.9
0.9
1.5
86.09
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027627
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045903
16566152 - 16573759
7608