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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16570003_16571961_F

Intron Information:

Intron Rank:
144019
Intron Class:
major
Intron Phase:
Intron Coordinates:
16570003 - 16571961
Intron Length:
1959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGATA
5'SS Class:
major
3'SS Sequence:
GTTCTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TATATCAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
37
Major BPS
70.2
0.5
1
72.1
33
Major PPT
78.6
0.64
0.8
72.6
32.3
Minor 5ss
29
-2.4
3.4
38.5
46.8
Minor BPS
46.2
-0.2
2
68.08
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027627
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038051
16569872 - 16572900
3029