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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16572005_16572540_F

Intron Information:

Intron Rank:
144020
Intron Class:
major
Intron Phase:
Intron Coordinates:
16572005 - 16572540
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.8
0.83
0.7
80.7
30.6
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
78.9
0.9
1.5
86.09
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027627
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038051
16569872 - 16572900
3029