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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16699756_16712125_R

Intron Information:

Intron Rank:
139891
Intron Class:
major
Intron Phase:
Intron Coordinates:
16699756 - 16712125
Intron Length:
12370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TGTCTCTATGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ACCTCCTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
67.4
0.39
1.1
68.4
36.7
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
56.4
0.18
1.7
62.34
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022664
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032656
16698809 - 16713842
15034