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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16714110_16760668_F

Intron Information:

Intron Rank:
150631
Intron Class:
major
Intron Phase:
Intron Coordinates:
16714110 - 16760668
Intron Length:
46559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.8
0.71
0.7
79.8
25.6
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
50.9
0.01
1.9
62.77
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030927
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032959
16713656 - 16760971
47316