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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16714110_16767698_F

Intron Information:

Intron Rank:
150628
Intron Class:
major
Intron Phase:
Intron Coordinates:
16714110 - 16767698
Intron Length:
53589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTTTTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.8
0.65
1
76.7
36.2
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
68.2
0.57
1.4
75.34
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030927
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047269
16713656 - 16771009
57354
ENSAPLT00000028180
16713656 - 16771009
57354