Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16768144_16770785_F

Intron Information:

Intron Rank:

150630

Intron Class:

major

Intron Phase:

Intron Coordinates:

16768144 - 16770785

Intron Length:

2642

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATACCA

5'SS Class:

major

3'SS Sequence:

CTCTTGTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATTTTTTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

67.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

84.9

0.78

0.8

79.6

32.4

Minor 5ss

32.3

-2

40.9

44.8

Minor BPS

72.4

0.7

1.2

78.49

31.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030927

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028180

16713656 - 16771009

57354