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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_168119_174134_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
168119 - 174134
Intron Length:
6016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATA
Flanking Amino Acid:
SIRRHRWRREDAEGVNGREE
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.8
78.5
33.7
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
74.3
0.76
1.5
84.09
29.2

Associated Gene:

Gene:
FAM126B
Ensembl Gene ID:
ENSAPLG00000015610
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036696
122670 - 198917
76248