Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1682949_1686038_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1682949 - 1686038

Intron Length:

3090

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTAAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAC

U12 Branch Point Sequence:

TTTGTTTTAAAG

Flanking Amino Acid:

SRKLVSFTLSDIRAVGLKKG

Intron Amino Acid Position:

191

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

36.4

Major BPS

0.5

0.9

61.4

35.9

Major PPT

0.7

82.2

33.3

Minor 5ss

32.2

-2

39.4

46.1

Minor BPS

62.1

0.24

1.6

67.62

40.4

Associated Gene:

Gene:

HECW2

Ensembl Gene ID:

ENSAPLG00000015383

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032573

1636216 - 1741852

105637

ENSAPLT00000016094

1636265 - 1797462

161198