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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16838525_16839315_R

Intron Information:

Intron Rank:
153668
Intron Class:
major
Intron Phase:
Intron Coordinates:
16838525 - 16839315
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
TAACACAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
78.8
31.5
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
84.9
0.79
0.8
82
34.7
Minor 5ss
41
-1
2.8
53.4
43.8
Minor BPS
45.7
-0.2
2
66.23
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030165
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033167
16838432 - 16844651
6220