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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16839434_16844200_R

Intron Information:

Intron Rank:
153669
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
16839434 - 16844200
Intron Length:
4767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
AAAATGGCTGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
52.9
0.07
1
44.2
42.3
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030165
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043670
16750834 - 16844223
93390
ENSAPLT00000033167
16838432 - 16844651
6220