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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_16923343_16929412_F

Intron Information:

Intron Rank:
144898
Intron Class:
major
Intron Phase:
Intron Coordinates:
16923343 - 16929412
Intron Length:
6070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTAACTTATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.6
0.51
1
69.8
40.3
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
58.7
0.35
1.7
77.98
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028124
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026292
16922381 - 16929497
7117