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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1695663_1698718_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1695663 - 1698718
Intron Length:
3056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGTTC
5'SS Class:
major
3'SS Sequence:
TATTGCTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTGCTACTT
Flanking Amino Acid:
YQRVDEALPPNWEARIDSHG
Intron Amino Acid Position:
806

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
72.8
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.7
0.42
0.9
67
39.2
Minor 5ss
37.6
-1.4
3.4
50
41
Minor BPS
43.7
-0.4
2.4
68.6
42.8

Associated Gene:

Gene:
HECW2
Ensembl Gene ID:
ENSAPLG00000015383
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032573
1636216 - 1741852
105637
ENSAPLT00000016094
1636265 - 1797462
161198