Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17092936_17125830_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17092936 - 17125830

Intron Length:

32895

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGGAGG

5'SS Class:

major

3'SS Sequence:

GTTTTGCCTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTGCCTAAAG

Flanking Amino Acid:

LSSQVRNVQLDSVWTVMTAR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

64.3

47.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

68.8

0.42

1.1

67.9

38.1

Minor 5ss

31.2

-2.1

3.1

31.4

42.5

Minor BPS

52.2

-0

2.2

69.58

43.3

Associated Gene:

Gene:

PTPN4

Ensembl Gene ID:

ENSAPLG00000013704

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037396

17092881 - 17192872

99992