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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17132561_17137190_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17132561 - 17137190
Intron Length:
4630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
TATCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTCTCTAAAAT
Flanking Amino Acid:
QLADESTDNPRWLDPNKPIR
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
63
43.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
85.5
0.8
0.8
77.2
36.6
Minor 5ss
42.5
-0.8
2.8
59.2
45.2
Minor BPS
62
0.45
1.8
82.38
38.6

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014341
17125831 - 17192872
67042
ENSAPLT00000047684
17114387 - 17192872
78486
ENSAPLT00000037396
17092881 - 17192872
99992