Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17137234_17137329_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17137234 - 17137329

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTACG

5'SS Class:

strong_major

3'SS Sequence:

TCCTTGACCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

CTTTCCTTGACC

Flanking Amino Acid:

PNKPIRKQLKRGSPHSLNLR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

74.2

36.1

Major BPS

0.6

1.2

75.9

36.3

Major PPT

67.3

0.39

0.9

61.6

33.7

Minor 5ss

32.3

-2

2.6

35.2

34.2

Minor BPS

84.4

1.07

85.91

32.5

Associated Gene:

Gene:

PTPN4

Ensembl Gene ID:

ENSAPLG00000013704

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047684

17114387 - 17192872

78486

ENSAPLT00000037396

17092881 - 17192872

99992

ENSAPLT00000014341

17125831 - 17192872

67042