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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17141012_17141254_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17141012 - 17141254
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
AAAAACAAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTTCTAAAAA
Flanking Amino Acid:
LQIKQDILTGRLPCPYNTAA
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
47.3
-0.1
1.1
34.6
38.6
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
60
0.31
1.8
71.75
40.6

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047684
17114387 - 17192872
78486
ENSAPLT00000037396
17092881 - 17192872
99992
ENSAPLT00000014341
17125831 - 17192872
67042