About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17143642_17144694_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17143642 - 17144694
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
KEIAKLHQQHIGLSPAEAEF
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
84.6
32.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
40.6
-1
3.4
62.3
42.4
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047684
17114387 - 17192872
78486
ENSAPLT00000037396
17092881 - 17192872
99992
ENSAPLT00000014341
17125831 - 17192872
67042