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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17144783_17146183_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17144783 - 17146183
Intron Length:
1401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAAAC
Flanking Amino Acid:
LYGVELHYARDQSNNEIMIG
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.2
0.68
1
82.4
26.6
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
57
0.2
1.6
68.3
36.9

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014341
17125831 - 17192872
67042