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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17151419_17157336_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17151419 - 17157336
Intron Length:
5918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTATCTGAAAC
Flanking Amino Acid:
QFFIQLRKELHESRETLLGF
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
74.9
0.56
0.8
66.4
34.6
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
56.7
0.19
1.6
67.9
36.7

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047684
17114387 - 17192872
78486
ENSAPLT00000037396
17092881 - 17192872
99992
ENSAPLT00000014341
17125831 - 17192872
67042