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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17157510_17161528_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17157510 - 17161528
Intron Length:
4019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGGCGTTTAATA
Flanking Amino Acid:
YFTLGSKFRYCGRTEVQSVQ
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
52
0.06
1.8
61.02
39.6

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047684
17114387 - 17192872
78486
ENSAPLT00000037396
17092881 - 17192872
99992
ENSAPLT00000014341
17125831 - 17192872
67042