Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17179013_17180326_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17179013 - 17180326

Intron Length:

1314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTTAT

5'SS Class:

major

3'SS Sequence:

TTGTGTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TTTTACAGATTT

Flanking Amino Acid:

IVSRVAPGTPADLCVPRLNE

Intron Amino Acid Position:

556

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

77.3

33.6

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

78.8

0.65

72.9

42.2

Minor 5ss

44.8

-0.6

2.9

68.1

42.7

Minor BPS

47.1

-0.1

2.1

75.19

41.3

Associated Gene:

Gene:

PTPN4

Ensembl Gene ID:

ENSAPLG00000013704

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047684

17114387 - 17192872

78486

ENSAPLT00000037396

17092881 - 17192872

99992

ENSAPLT00000014341

17125831 - 17192872

67042