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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17182120_17183851_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17182120 - 17183851
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATCTTGACC
Flanking Amino Acid:
ITGTVLAQFDQLYRKKPGMT
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
70.5
0.63
1.2
75.17
35

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037396
17092881 - 17192872
99992
ENSAPLT00000014341
17125831 - 17192872
67042
ENSAPLT00000047684
17114387 - 17192872
78486