About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17183943_17184024_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17183943 - 17184024
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
AAAATTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCTAAAATT
Flanking Amino Acid:
SKNRYRDISPYDATRVILKS
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.2
0.55
1
70.3
44.5
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
53.6
0.19
1.9
76.08
41.4

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037396
17092881 - 17192872
99992
ENSAPLT00000014341
17125831 - 17192872
67042
ENSAPLT00000047684
17114387 - 17192872
78486