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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17188276_17190976_F

Intron Information:

Intron Rank:
24
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
17188276 - 17190976
Intron Length:
2701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCCTT
5'SS Class:
weak_minor
3'SS Sequence:
GTTGTTTTTACAG|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GATACTTTATTT
Flanking Amino Acid:
GREEPVVVHCSAGIGRTGVL
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
65.3
46
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.8
0.81
0.8
79.9
37.7
Minor 5ss
69
0.64
2.3
82.6
36.8
Minor BPS
56.6
0.28
1.6
70.63
40.5

Associated Gene:

Gene:
PTPN4
Ensembl Gene ID:
ENSAPLG00000013704
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047684
17114387 - 17192872
78486
ENSAPLT00000037396
17092881 - 17192872
99992
ENSAPLT00000014341
17125831 - 17192872
67042