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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17217330_17217635_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17217330 - 17217635
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTCTTTTATG
Flanking Amino Acid:
LQLKLDILSGKLECPFDTAV
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.7
0.67
1
77.4
35.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
63.8
0.29
1.7
69.21
38.4

Associated Gene:

Gene:
EPB41L5
Ensembl Gene ID:
ENSAPLG00000014391
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017734
17200486 - 17247469
46984
ENSAPLT00000015065
17200486 - 17249121
48636