Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17227784_17228725_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17227784 - 17228725

Intron Length:

942

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGGCCT

5'SS Class:

major

3'SS Sequence:

TCTATCTCCAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTTAT

U12 Branch Point Sequence:

TTTATAGTAACT

Flanking Amino Acid:

VITQTNGSQQSWNAKPNVPV

Intron Amino Acid Position:

409

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

69.8

40.7

Major BPS

72.5

0.56

1.1

63.4

Major PPT

66.8

0.38

67.1

Minor 5ss

35.1

-1.7

3.4

49.3

40.8

Minor BPS

52.4

0.15

2.3

81.54

39.8

Associated Gene:

Gene:

EPB41L5

Ensembl Gene ID:

ENSAPLG00000014391

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017734

17200486 - 17247469

46984

ENSAPLT00000015065

17200486 - 17249121

48636