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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17228845_17237912_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17228845 - 17237912
Intron Length:
9068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
TTCTGCCTATCT
Flanking Amino Acid:
SPGASQQDKKCVPLVDLLDS
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.9
34
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
82.7
0.73
0.8
76.6
32
Minor 5ss
49.1
-0.1
2.4
64.8
41.7
Minor BPS
48.8
-0
2.3
76.35
46.1

Associated Gene:

Gene:
EPB41L5
Ensembl Gene ID:
ENSAPLG00000014391
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017734
17200486 - 17247469
46984
ENSAPLT00000015065
17200486 - 17249121
48636