Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17260074_17260416_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17260074 - 17260416

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAAGCAT

5'SS Class:

major

3'SS Sequence:

CTCTTGTATTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

CTCCCCATAACT

Flanking Amino Acid:

INSSWYNIRTSQGPPPAVGH

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.61

38.5

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

74.5

0.55

0.9

73.3

36.3

Minor 5ss

26.3

-2.7

3.3

37.6

47.1

Minor BPS

63.8

0.51

1.7

78.49

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017402

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042139

17259374 - 17273204

13831