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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17260604_17261507_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17260604 - 17261507
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATGAATTAATA
Flanking Amino Acid:
ISQEFWSFHFDTRKWLCVST
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.5
0.75
0.8
80.7
36.3
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
52.5
0.07
1.9
66.89
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017402
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042139
17259374 - 17273204
13831