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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17263085_17263809_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17263085 - 17263809
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGATAC
5'SS Class:
major
3'SS Sequence:
AACAATTCCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GCTTTATTAAAA
Flanking Amino Acid:
AKTPLWIYDTDSARWTECRN
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.5
33.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
57.5
0.17
0.9
47.5
40.3
Minor 5ss
44.5
-0.6
2.8
55.6
43.4
Minor BPS
56.8
0.21
1.7
66.31
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017402
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042139
17259374 - 17273204
13831