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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17264766_17265640_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17264766 - 17265640
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGGTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
ACTGTCTTAACT
Flanking Amino Acid:
SLRDFWRYNLARNEWEMLDC
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
72.4
0.5
0.9
69.2
41.8
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
72.9
0.8
1.4
81.49
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017402
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042139
17259374 - 17273204
13831