Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17329406_17330736_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17329406 - 17330736

Intron Length:

1331

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TCATCTCCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TAATACTAAACA

Flanking Amino Acid:

ALTLQFMYDEFVEDYEPTKA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.3

1.11

0.7

90.9

28.7

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

80.5

0.69

0.8

77.7

30.9

Minor 5ss

37.5

-1.4

2.8

51.6

44.9

Minor BPS

59.3

0.29

1.9

70.83

40.7

Associated Gene:

Gene:

RALB

Ensembl Gene ID:

ENSAPLG00000017843

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029930

17288137 - 17335144

47008

ENSAPLT00000022276

17317832 - 17335532

17701