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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1734648_1735819_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1734648 - 1735819
Intron Length:
1172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
GTACCCTTGATG
Flanking Amino Acid:
NNEQRLRLLQFVTGTSSIPY
Intron Amino Acid Position:
1493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
73.6
0.53
1.1
69.6
41.6
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
62.7
0.26
1.4
61.82
40

Associated Gene:

Gene:
HECW2
Ensembl Gene ID:
ENSAPLG00000015383
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032573
1636216 - 1741852
105637