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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1734648_1797408_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1734648 - 1797408
Intron Length:
62761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTAGACT
Flanking Amino Acid:
NNEQRLRLLQFVTVSKFWGV
Intron Amino Acid Position:
1493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.2
0.77
0.8
77.8
35
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
58.1
0.34
1.9
82.07
39.1

Associated Gene:

Gene:
HECW2
Ensembl Gene ID:
ENSAPLG00000015383
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016094
1636265 - 1797462
161198