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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1735933_1740926_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1735933 - 1740926
Intron Length:
4994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACTG
5'SS Class:
major
3'SS Sequence:
TATTTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ACTTCTCTACCT
Flanking Amino Acid:
EKWGKITALPRAHTCFNRLD
Intron Amino Acid Position:
1530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.9
44.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
80.7
0.69
0.8
78.3
30.1
Minor 5ss
33.9
-1.8
3.5
47.5
47.9
Minor BPS
53.5
0.19
2
74.59
42.5

Associated Gene:

Gene:
HECW2
Ensembl Gene ID:
ENSAPLG00000015383
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032573
1636216 - 1741852
105637