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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17432489_17460925_R

Intron Information:

Intron Rank:
142247
Intron Class:
major
Intron Phase:
Intron Coordinates:
17432489 - 17460925
Intron Length:
28437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
ATTTTAGGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
47.8
-0
2.3
76.24
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023875
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030566
17432341 - 17462036
29696