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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17470670_17472190_F

Intron Information:

Intron Rank:
139048
Intron Class:
major
Intron Phase:
Intron Coordinates:
17470670 - 17472190
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATCATGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.9
0.56
0.9
66.3
40.2
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
47.1
-0.2
2.1
61.8
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024874
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026463
17470452 - 17472453
2002