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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17470670_17474922_F

Intron Information:

Intron Rank:
139052
Intron Class:
major
Intron Phase:
Intron Coordinates:
17470670 - 17474922
Intron Length:
4253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATCTCCTGATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
89.8
0.89
0.7
89.4
26.6
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
55.8
0.18
1.7
66.52
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024874
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045405
17470452 - 17476647
6196