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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17474990_17475799_F

Intron Information:

Intron Rank:
139053
Intron Class:
major
Intron Phase:
Intron Coordinates:
17474990 - 17475799
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
CACTGCTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AACCTTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.7
0.6
0.9
72.6
37.2
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
49.7
0.06
1.6
65.27
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024874
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045405
17470452 - 17476647
6196