Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17626770_17697950_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17626770 - 17697950

Intron Length:

71181

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACTTTAT

5'SS Class:

major

3'SS Sequence:

TTCCCCTCCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTCTAT

U12 Branch Point Sequence:

TCTTCTTCTATT

Flanking Amino Acid:

AAAGAAVAQGVPQHIFPAFH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

34.2

Major BPS

61.5

0.29

1.3

62.1

44.1

Major PPT

77.8

0.62

0.7

72.1

26.1

Minor 5ss

40.9

-1

3.1

58.4

46.1

Minor BPS

55.4

0.25

1.9

75.66

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020961

17626607 - 17762403

135797

ENSAPLT00000015836

17626607 - 17762403

135797