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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1764975_1765235_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1764975 - 1765235
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTACTATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGAATT
Flanking Amino Acid:
ENNIVHLDLKPQNILLSSIN
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.7
0.65
0.8
71
39.5
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
60.6
0.41
1.7
80.32
35.1

Associated Gene:

Gene:
STK17B
Ensembl Gene ID:
ENSAPLG00000015076
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015736
1756337 - 1769377
13041