Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17735516_17737871_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17735516 - 17737871

Intron Length:

2356

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACACTT

5'SS Class:

major

3'SS Sequence:

CCCACTGCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

AGCTCCTCATCA

Flanking Amino Acid:

SYGHLSAGTISPAFSFPHPI

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

75.5

40.6

Major BPS

73.1

0.58

79.6

29.1

Major PPT

67.9

0.4

0.9

60.6

35.1

Minor 5ss

43.4

-0.7

3.2

65.6

45.4

Minor BPS

52.3

0.07

1.8

63.01

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028479

17671432 - 17762403

90972

ENSAPLT00000020961

17626607 - 17762403

135797

ENSAPLT00000015836

17626607 - 17762403

135797