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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17738086_17739575_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17738086 - 17739575
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGTG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
AGTGCCACATCT
Flanking Amino Acid:
NSNCISDSSQSKQSSESAVS
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.1
40.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
83.6
0.76
0.7
77.5
31.2
Minor 5ss
31.4
-2.1
3.9
45.4
49.7
Minor BPS
44.4
-0.3
2.1
64.75
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015141
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015836
17626607 - 17762403
135797
ENSAPLT00000028479
17671432 - 17762403
90972
ENSAPLT00000020961
17626607 - 17762403
135797