Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17739690_17743147_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17739690 - 17743147

Intron Length:

3458

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCTTC

5'SS Class:

weak_major

3'SS Sequence:

TTGTGTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATACAA

U12 Branch Point Sequence:

TTCACCTTATAC

Flanking Amino Acid:

GLPPASPTTQEHLTDLKEDL

Intron Amino Acid Position:

389

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.2

73.2

39.3

Major BPS

65.8

0.39

73.3

31.3

Major PPT

78.8

0.65

72.9

42.2

Minor 5ss

63.9

0.47

2.4

76.5

39.2

Minor BPS

57.5

0.21

1.8

68.48

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028479

17671432 - 17762403

90972

ENSAPLT00000020961

17626607 - 17762403

135797

ENSAPLT00000015836

17626607 - 17762403

135797