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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17759180_17760046_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17759180 - 17760046
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTCCCCACAACC
Flanking Amino Acid:
NTKLPPISGNGSVLENSGGS
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
78.9
0.65
0.8
76.7
31.3
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
54.2
0.11
1.9
69.72
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015141
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028479
17671432 - 17762403
90972
ENSAPLT00000020961
17626607 - 17762403
135797
ENSAPLT00000015836
17626607 - 17762403
135797