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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17849050_17849434_F

Intron Information:

Intron Rank:
144772
Intron Class:
major
Intron Phase:
Intron Coordinates:
17849050 - 17849434
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATCAAT
U12 Branch Point Sequence:
TTTTTTCTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
74.9
34.9
Major BPS
51.3
0.03
1.4
62.7
41.6
Major PPT
91.7
0.94
0.6
87.8
22.4
Minor 5ss
31
-2.2
3.6
46.5
48.8
Minor BPS
53.7
0.11
2
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028026
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025186
17848839 - 17851205
2367