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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17859559_17859974_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17859559 - 17859974
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTCTTTATTA
Flanking Amino Acid:
ESCFVISTLKAESNDGYHII
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.1
0.88
0.7
84.3
29.1
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
67.8
0.55
1.5
75.74
36

Associated Gene:

Gene:
TFCP2L1
Ensembl Gene ID:
ENSAPLG00000015648
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016325
17859521 - 17890942
31422