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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17862263_17863241_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17862263 - 17863241
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CAACTTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTCCTTTCAACT
Flanking Amino Acid:
KRENGDGSLCVYHAIFLEEL
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
71.7
0.49
1
65
40.7
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
61
0.42
1.5
76.97
39.8

Associated Gene:

Gene:
TFCP2L1
Ensembl Gene ID:
ENSAPLG00000015648
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016325
17859521 - 17890942
31422