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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17864109_17864976_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17864109 - 17864976
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGAAATACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTGCTTAACT
Flanking Amino Acid:
PFCRLFSSFSGADLLKMSKE
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.8
38.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
54.1
0.09
1
47
39.4
Minor 5ss
37.9
-1.4
2.9
40.9
45.3
Minor BPS
79.7
1.01
1.7
94.5
32.7

Associated Gene:

Gene:
TFCP2L1
Ensembl Gene ID:
ENSAPLG00000015648
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016325
17859521 - 17890942
31422